{ "_id": "6a1ee5f5b401979e7341142e", "Package": "sparsevb", "Type": "Package", "Title": "Spike-and-Slab Variational Bayes for Linear and Logistic\nRegression", "Version": "0.1.0", "Date": "2021-1-04", "Authors@R": "c(person(\"Gabriel\", \"Clara\", email = \"gabriel.j.clara@gmail.com\", role = c(\"aut\", \"cre\")), person(\"Botond\", \"Szabo\", role = \"aut\"), person(\"Kolyan\", \"Ray\", role = \"aut\"))", "Maintainer": "Gabriel Clara ", "Description": "Implements variational Bayesian algorithms to perform\nscalable variable selection for sparse, high-dimensional linear\nand logistic regression models. Features include a novel\nprioritized updating scheme, which uses a preliminary estimator\nof the variational means during initialization to generate an\nupdating order prioritizing large, more relevant, coefficients.\nSparsity is induced via spike-and-slab priors with either\nLaplace or Gaussian slabs. By default, the heavier-tailed\nLaplace density is used. Formal derivations of the algorithms\nand asymptotic consistency results may be found in Kolyan Ray\nand Botond Szabo (2020) and\nKolyan Ray, Botond Szabo, and Gabriel Clara (2020)\n.", "BugReports": "https://gitlab.com/gclara/varpack/-/issues", "License": "GPL (>= 3)", "Encoding": "UTF-8", "RoxygenNote": "7.1.1", "Repository": "https://gabriel-clara.r-universe.dev", "Date/Publication": "2025-01-23 22:27:32 UTC", "RemoteUrl": "https://gitlab.com/gclara/varpack", "RemoteRef": "HEAD", "RemoteSha": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-18 05:50:58 UTC", "User": "root" }, "Author": "Gabriel Clara [aut, cre],\nBotond Szabo [aut],\nKolyan Ray [aut]", "MD5sum": "eb32b6a35f9c5e3aeef1099c918d0e91", "_user": "gabriel-clara", "_type": "src", "_file": "sparsevb_0.1.0.tar.gz", "_fileid": "af31bb8ad083ab03fe44d6dc44b907028c8355c81c7de237fe342456a5a2b212", "_filesize": 171829, "_sha256": "af31bb8ad083ab03fe44d6dc44b907028c8355c81c7de237fe342456a5a2b212", "_created": "2026-05-18T05:50:58.000Z", "_published": "2026-06-02T14:17:25.470Z", "_distro": "noble", "_jobs": [ { "job": 79092192286, "time": 144, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7050455901" }, { "job": 79092192328, "time": 151, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7050457206" }, { "job": 79092193105, "time": 134, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7050454013" }, { "job": 79092193033, "time": 181, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7050462762" }, { "job": 79092192681, "time": 129, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 79092192432, "time": 180, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 79092192073, "time": 228, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7050464427" }, { "job": 79092192721, "time": 456, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7050507332" }, { "job": 79092191484, "time": 191, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7050428028" }, { "job": 79092191221, "time": 121, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7360310776" }, { "job": 79092191870, "time": 162, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7050458219" }, { "job": 79092192581, "time": 76, "config": "windows-oldrel", "r": "4.5.3", "check": "FAIL", "artifact": "" }, { "job": 79092192400, "time": 138, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7050454528" } ], "_buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://gitlab.com/gclara/varpack", "_commit": { "id": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "author": "Gabriel Clara ", "committer": "Gabriel Clara ", "message": "Merge branch 'coatless-master-patch-32562' into 'master'\n\nUpdate DESCRIPTION to remove `SystemRequirements: C++11` and remove `Authors`...\n\nSee merge request gclara/varpack!1", "time": 1737671252 }, "_maintainer": { "name": "Gabriel Clara", "email": "gabriel.j.clara@gmail.com", "login": "gabriel-clara", "description": "", "uuid": 228920406 }, "_registered": true, "_dependencies": [ { "package": "Rcpp", "role": "LinkingTo" }, { "package": "RcppArmadillo", "role": "LinkingTo" }, { "package": "RcppEnsmallen", "role": "LinkingTo" }, { "package": "Rcpp", "version": ">= 1.0.5", "role": "Imports" }, { "package": "selectiveInference", "version": ">= 1.2.5", "role": "Imports" }, { "package": "glmnet", "version": ">= 4.0-2", "role": "Imports" }, { "package": "stats", "role": "Imports" } ], "_owner": "gitlab-gclara", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_userbio": { "uuid": 228920406, "type": "user", "name": "gabriel-clara" }, "_downloads": { "count": 255, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/sparsevb" }, "_devurl": "https://gitlab.com/gclara/varpack", "_searchresults": 13, "_topics": [ "openblas", "cpp", "openmp" ], "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/sparsevb.html", "manual.pdf" ], "_homeurl": "https://gitlab.com/gclara/varpack", "_realowner": "gabriel-clara", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2021-01-15" }, { "version": "0.1.1", "date": "2025-01-24" } ], "_exports": [ "svb.fit" ], "_help": [ { "page": "sparsevb-package", "title": "sparsevb: Spike-and-Slab Variational Bayes for Linear and Logistic Regression", "topics": [ "sparsevb-package", "sparsevb" ] }, { "page": "svb.fit", "title": "Fit Approximate Posteriors to Sparse Linear and Logistic Models", "topics": [ "svb.fit" ] } ], "_rundeps": [ "adaptMCMC", "coda", "codetools", "foreach", "glmnet", "intervals", "iterators", "lattice", "MASS", "Matrix", "ramcmc", "Rcpp", "RcppArmadillo", "RcppEigen", "RcppEnsmallen", "selectiveInference", "shape", "survival" ], "_sysdeps": [ { "shlib": "liblapack", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libblas", "package": "libopenblas0-pthread", "source": "openblas", "version": "0.3.26+ds-1ubuntu0.1", "name": "openblas", "homepage": "https://www.openblas.net/", "description": "Optimized BLAS (linear algebra) library (shared lib, pthread)" }, { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" }, { "shlib": "libgomp", "package": "libgomp1", "source": "gcc", "version": "14.2.0-4ubuntu2~24.04.1", "name": "openmp", "homepage": "http://gcc.gnu.org/", "description": "GCC OpenMP (GOMP) support library" } ], "_score": 2.113943352306837, "_indexed": true, "_nocasepkg": "sparsevb", "_universes": [ "gabriel-clara", "gitlab-gclara" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.1.0", "date": "2026-05-18T05:53:20.000Z", "distro": "noble", "arch": "aarch64", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "4c57b100ac697ad53a2dddc493a1d8e2fa1fa4be3821e63045733951097d6d34", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" }, { "r": "4.7.0", "os": "linux", "version": "0.1.0", "date": "2026-05-18T05:53:23.000Z", "distro": "noble", "arch": "x86_64", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "816004b640ef285c251e7f012daae860a32623f2d7297f3752d83608babab6ba", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" }, { "r": "4.6.0", "os": "linux", "version": "0.1.0", "date": "2026-05-18T05:53:12.000Z", "distro": "noble", "arch": "aarch64", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "2e0423112bfda7ec4c2e8186ed3ffbd7256d1c39844c4f52717b6dc7229ed8a2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" }, { "r": "4.6.0", "os": "linux", "version": "0.1.0", "date": "2026-05-18T05:53:53.000Z", "distro": "noble", "arch": "x86_64", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "eb74f09b5f62f4979dae8a4cdf78b966e93414c86d1b3449bfada5b050a415b9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" }, { "r": "4.6.0", "os": "mac", "version": "0.1.0", "date": "2026-05-18T05:53:54.000Z", "arch": "aarch64", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "8f108ffe951e1313a3241d51bcbdfd6cfa0eb19a5d76d380ecc89fd90a89b4ff", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" }, { "r": "4.6.0", "os": "mac", "version": "0.1.0", "date": "2026-05-18T05:56:10.000Z", "arch": "x86_64", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "c0750a19fd6f56ef01145f623fef292108807b711e5e71479082dfd4466cd48d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" }, { "r": "4.7.0", "os": "win", "version": "0.1.0", "date": "2026-05-18T05:53:04.000Z", "arch": "x86_64", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "00b7b4d19634c59763a3d98c37c383ae141da6352e78a947bb42c6169f38da1e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" }, { "r": "4.6.0", "os": "win", "version": "0.1.0", "date": "2026-05-18T05:52:35.000Z", "arch": "x86_64", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "c2dbba0a489feb600c8a31c1fc63664b00b5975146b99d941ff33b8b00661d7a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" }, { "r": "4.6.0", "os": "wasm", "version": "0.1.0", "date": "2026-06-02T14:16:41.000Z", "arch": "emscripten", "commit": "458c2ef57401c9a1fe806d7087b27a649b54fd7e", "fileid": "f9ec13ce523fbfbc8ba19a05993c8551aea43ec271e822cf16167a621cd153c3", "status": "success", "buildurl": "https://github.com/r-universe/gabriel-clara/actions/runs/26015948558" } ] }